This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Forum: Metagenomics Raw dataset

Hello everyone,

I'm writing a paper on soil metagenomics, I want to analyze the samples using tools but am not sure where to get the raw data for analysis.

I also want to know how is this soil metagenomics going to help crop improvement.

Thanks all!

metagenomics
• 6,430 views • link
updated by Ram Ram • written by deepakrishna.bioinfo • deepakrishna.bioinfo

NCBI-SRA - Download data using SRAtoolkit.

• 1 views • link
updated by Ram Ram • written by venu venu

Thanks for the response, but I wanna know how do I carry the workflow???

Just get the sequence, run it using RAST server??

I also want to know how to interpret this for crop improvement, this is first time am working on metagenomics and have no clue...

Pls help me.....

• 1 views • link
updated by Ram Ram • written by deepakrishna.bioinfo • deepakrishna.bioinfo

And I want to know how to implement a parallel hypergeometric summation algorithm, but I don't expect that somebody in the internet will just tell me how. Instead, I'm actually going to read some relevant scientific literature, use google, etc., and then finally ask specific questions in forums..

• 1 views • link
written by 5heikki 5heikki

2 answers

mg-rast has nearly 32k public metagenomes

• 1 views • link
updated by Ram Ram • written by 5heikki 5heikki

Anyway, you can also look at the IMG portal of the JGI

• 1 views • link
updated by Ram Ram • written by dago dago

Log in to answer this question.

More posts like this