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genetic distance for iHS or XP-EHH

The selscan need a mapfile which contains genetic distance when calculating iHS or XPEHH. But how to
deal with non-model species without genetic map?

genetic distance ihs xp-ehh
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updated by Katalobo • Katalobo • written by coly_fu • coly_fu

1 answer

Try to approximate 1Mb = 1 cM. We did this for cattle...

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updated by Ram Ram • written by Katalobo • Katalobo

Thank you. I also have thought about making a fake genetic distance according to physic map. But will it make any difference to the result?

Is there any other solution? such as by calculating recombination rate.

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updated by Ram Ram • written by coly_fu • coly_fu

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