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Structural alignment of compounds

Is there any algorithm for structural alignment of compounds (using pdb files)? or which algorithms are used for finding structurally similar compounds by using which parameters as in Pubchem compounds and in chemicalize org?

alignment algorithms
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updated by Pappu Pappu • written by Janeeta Raja • Janeeta Raja

1 answer

Look zinc.docking.org
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written by Pappu Pappu

Thanks. But I want the strategy and algorithm behind structural similarity searches.

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written by Janeeta Raja • Janeeta Raja

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