Merge Velvet Assemblies · Biostar

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Merge Velvet Assemblies

Dear experts, I have 3-4 nice velvet assemblies from different k-mer's. I want to merge all these assemblies into a single one. I was trying to do this using Minimus2 or Minimus2-Blat. Can anybody please suggest me any other nice tool/method to do this? And would it be nice to do Scaffolding of velvet scaffolds(As I turned on the scaffolding option during the velvet run) with Minimus2(can also work on N's) ? I would really appreciate your comments. Best regards, Rahul

velvet merge

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updated 14.5 years ago by Darked89

• written 14.5 years ago by Rahul Sharma

2 answers

You can try:

GAM - [?]http://services.appliedgenomics.org/software/gam/index.html[?]

Zorro - [?]http://www.lge.ibi.unicamp.br/zorro[?]

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written 14.5 years ago by Damian Kao

Thanks DK for your valuable comments

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written 14.5 years ago by Rahul Sharma

Not tested:

MAIA http://bioinformatics.oxfordjournals.org/content/26/18/i433.short (Matlab...)
Oslay
http://ab.inf.uni-tuebingen.de/software/oslay/
Trans-Abyss
http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss

• 1 views • link

updated 6.9 years ago by Ram

• written 14.5 years ago by Darked89

Thank you so much for your valuable comment,, I will try these tools :)

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written 14.5 years ago by Rahul Sharma

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