Generating Gencode TSS file
I'm interested in obtaining a bed file of TSS from Gencode v19. I had previously built one for RefSeq TSS that had approximately 30k TSS. But I seem to be getting over 100k+ TSS for Gencode using UCSC. Why is this? Is gencode giving me a TSS for every isoforms?
How can I generate a TSS file using the Gencode annotation?
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the README file from Genocode TSSs explains how they were created and you can download the file from there