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Convert SBML to .sif for Cytoscape

I have an SBML L2 V4 file (http://www.ebi.ac.uk/biomodels-main/BMID000000140371) and I want to convert it into .SIF for Cytoscape. I imported it into Cytoscape but I wasn't able to convert it from there. Does anyone know of a reliable tool I could use for this? Command line options are fine as well as GUIs.

cytoscape network sbml
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updated by Ram Ram • written by jolespin jolespin

Hi, you should be able to simply export the network as .sif file. File>Export>Network opens the appropriate dialog. Hope this helps, Piet

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written by piet.amc • piet.amc

1 answer

Unfortunately, I don't believe there is a converter that will generate .SIF files at this time. However, a plug-in for Cytoscape is available to read SBML files. It is called CySBML. Perhaps this will be sufficient for your needs?

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updated by Ram Ram • written by mhucka mhucka

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