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Using VMD to determine ligand binding site

Hi everyone, I'm a beginner of VMD. I want to ask how can we use VMD to find a ligand binding site. I have already find the ligand and look for the way to identify the binding site but it is so hard to find. I search in Internet but no instructions is availble. If anyone has an experience using VMD, can you help me please??

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updated by Biostar Biostar • written by thaonguyen8310 • thaonguyen8310

2 answers

You need to use a docking software like autodock to find out ligand binding site to protein. You can visualize the results in VMD.

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written by Pappu Pappu

Thank you very much for your help :))

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written by thaonguyen8310 • thaonguyen8310

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