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about editing SAM/BAM files

Hello,

I am trying to learn sam tools for extracting the data of specific regions in SAM/BAM files from CG hub. So I will be looking for a specific regions in these files for numerous patients with a single cancer type. Could you advice me some sources about this topic because I would like to get advanced on this subject.

I looked for current biostars treads yet I have found one. Thus I apologise if there is an obvious one already.

Thank you for your help and advice.

Best regards,
Tunc

bam sam
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updated by Ram Ram • written by morovatunc morovatunc

1 answer

Check this biostars thread

Also, the samtools paper

Also, the sam format specification

Also, this

Also samtools manual

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updated by Ram Ram • written by tiago211287 tiago211287

Moved this to an answer and gave a +1, since this is all the answer that's needed.

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written by Devon Ryan Devon Ryan

I finished the course in 2 days. Thank you for your advice it was very usefull for me.

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written by morovatunc morovatunc

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