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DiscoSNP++ compilation problem

Hi,

I am getting this error:

bash-4.1$ ./compile_discoSnp++.sh
        Compiling discoSnp, from directory /home/cmb-02/sn1/tkitapci/software/DiscoSNP++-2.2.0-Darwin
mkdir: cannot create directory `build': File exists
CMake Error at CMakeLists.txt:25 (include):
  include could not find load file:

    GatbCore

CMake Error at CMakeLists.txt:64 (INCLUDE):
  include could not find load file:

    Delivery

-- Configuring incomplete, errors occurred!
See also "/home/cmb-02/sn1/tkitapci/software/DiscoSNP++-2.2.0-Darwin/build/CMakeFiles/CMakeOutput.log".
make: *** No targets specified and no makefile found.  Stop.

Can anybody please help me with this? Thanks!

Hamdi

snp
• 2,974 views • link
updated by Ram Ram • written by tkitapci tkitapci

Try deleting the build directory.

• 0 views • link
written by kloetzl kloetzl

That is not the problem. I am getting the exact same message "except the mkdir error" if I delete and run this. Thanks

• 0 views • link
written by tkitapci tkitapci

It seems that a cmake variable is not correctly set.

Could you add the following line in the CmakeLists.txt file of the main directory? You can add it the line just after ENDFOREACH(path)

MESSAGE ("===> CMAKE_MODULE_PATH=${CMAKE_MODULE_PATH}")

and can you give the result of this line after launching the compile_discoSnp++.sh script?

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updated by Ram Ram • written by edrezen edrezen

Hi, I have the exact same error as the one from this thread. I wanted to know if this was ever solved?

Thanks,
Annick

• 0 views • link
updated by Ram Ram • written by acros • acros

Hi, I have the exact same error as the one from this thread. I wanted to know if this was ever solved?

Thanks,
Annick

• 0 views • link
updated by Ram Ram • written by acros • acros

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