Estimation of haplotype block frequency and phylogentic analysis

I've a genome-wide SNP data set of a diploid plant species for 1500 varieties. I want to create a phylogenetic tree based on haplotype blocks. Can anyone help me in this regard? Haploview can find haplotype blocks but cant generate a tree on that basis.

hapltype frequency estimation phylogenetic tree

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updated 7.7 years ago by Biostar

• written 11.0 years ago by kumar.vinod81

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