MSA INDEL Realigner

Hi all,

Does someone know if there's a tool that is able to realign INDELs based on MSA (preferably clustalw/clustalo) output; similar as to what GATK does on BAM files?

Thanks!

indels realign msa

• 2,632 views • link

updated 3.8 years ago by Ram

• written 11.0 years ago by Coryza

1 answer

Mafft has an option to realign particular regions, but I don't how it will perform at realigning indels.

• 0 views • link

updated 3.8 years ago by Ram

• written 11.0 years ago by h.mon

Hi - I've looked into your suggestions and it seems that it's exactly doing as how I would want it to do.

• 0 views • link

updated 3.9 years ago by Ram

• written 11.0 years ago by Coryza

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