comparing protein networks over time
Hey Guys
I have constructed two separate protein interaction networks each denotes a time point of the assay at 2hours and 24 hours. Just wondering what tools and techniques I can use them to compare these networks both for biological and visual interpretation.
Thanks!
-Abhi
• 1,995 views
•
link
updated
by
Jean-Karim Heriche
•
written
by
Abhi
•
written
by
Abhi
1 answer
To look at evolution of protein modules over time, I use a tensor factorization approach. See this paper to get an idea. I also use the DynNetwork plugin to cytoscape.
• 0 views
•
link
written
by
Jean-Karim Heriche
Log in to answer this question.
More posts like this
-
Job: Bioinformaticians (x3) - Dublin City, Ireland
written by bulfin.triona •
-
project top genes/proteins on a Protein-Protein Interaction (PPI) network map
written by Abhi
-
finding mutations in RNA-Seq data
written by Abhi
-
How To Build Co-Expression Networks?
written by Alan R. Fachini •
-
Clustering Gene Expression For Time Course Rna-Seq Data
written by Abhi
-
Cuffmerge'S Transcript Model Merging
written by Abhi
-
Diff Gene Expression On Multiple Biological Conditions : Deseq
written by Abhi
-
Assessing Repeat Content Among Assembled Contigs
written by Abhi
-
Storing Fastq As Unaligned Bam
written by Abhi
-
Comparing Multiple Genome Assemblies With Reference
written by Abhi
