Aracne in Geworkbench

Dear all,

I am trying to run aracne in geworkbench 2.5.1.

It successfully run on some normalized gene expression data belong to cancer patients.

However when I try to run it on normalized gene expression data of normal tissue, I get the error message that "the aracne run resulted in no adjacent genes, consider relaxing your thresholds". I have tried different thresholds but only when I choose p-value=1, I can get some results.

Can any one give me any explanation about this problem and the probable reasons?

Thank you in advance

geworkbench aracne error message

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written 11.0 years ago by nazaninhoseinkhan

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