Hi,

I am trying to do Evolutionary Placement Algorithm with RAxmL and I want to perform bootstraping.

I first build a reference tree using

./raxmlHPC -f a -x 12345 -p 12345 -# 100 -m GTRGAMMA -s sequences.phy -n file_name -o outgroupName -w output_directory

then I use the bipartitions file to perform

./raxmlHPC -f v -m GTRGAMMA -s sequences(from the tree + query sequences).phy -t ibipartition_file -w output.directory -n Placement

Then I open the labelledTree with Dendroscope but I can only see node labels and no bootstrap values. Can anyone help me please?