Entering edit mode
8.7 years ago
carvin900
•
0
Hi,
I am trying to do Evolutionary Placement Algorithm with RAxmL and I want to perform bootstraping.
I first build a reference tree using
./raxmlHPC -f a -x 12345 -p 12345 -# 100 -m GTRGAMMA -s sequences.phy -n file_name -o outgroupName -w output_directory
then I use the bipartitions file to perform
./raxmlHPC -f v -m GTRGAMMA -s sequences(from the tree + query sequences).phy -t ibipartition_file -w output.directory -n Placement
Then I open the labelledTree with Dendroscope but I can only see node labels and no bootstrap values. Can anyone help me please?
