Database Of Non-Mobile Element Novel Sequence Insertions In Human Genome Reference?
Is there a database that lists, for non-mobile element sequences, not only the coordinates where novel sequence insertions have been found in the human genome but also compiles the assembled inserted sequences?
human
sequence
• 2,958 views
•
link
updated
by
Biostar
380
• |
written
by
Ahdf-Lell-Kocks
163
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Estimation of mobile elements insertions frequencies in heterogeneous samples
written by semion.leyn 0Hello! I need to estimate frequency of mobile elements rearrangements in heterogenous sample (Illumina PE150). Specifically: bacterial sample went through experimental evolution process and the …
-
How to obtain genomic coordinates of novel transcripts?
written by nattzy94 6Hi, I am trying to obtain genomic coordinates for a list of novel coding transcripts. These novel transcripts were obtained by first processing in-house generated …
-
delete several ranges from a DNA sequence
written by oinkost 0Hi, I have a probably very simple question, but I have not found a good solution yet. We are comparing a number of bacterial genomes …
-
How to obtain sequences of long insertion in VCF of 1000 genome project
written by ks 0I would like to obtain the sequences of long insertion of mobile element in 1000 genome project. In the VCF file, long insertion of mobile …
-
Determine Insertion Sequence
written by aostern 3Hi guys, I've developed a tool that identifies the points at which insertions are made. This basically means, for various BAM files, I have various …
-
Common Viral Dna In Human Sequencing Samples?
written by Ahdf-Lell-Kocks 163<p>What are the most common viral DNA sequences found in human or other mammalian resequencing samples? I have seen there is an NCBI refseq viral …
-
Chip-Seq Datasets For Human/Mouse Orthologs To Drosophila'S Beaf-32 And Chromator?
written by Ahdf-Lell-Kocks 163<p>EDIT: I couldn't find orthologs for these 3 genes for human/mouse, so the question is not relevant anymore.</p> <hr/> <p>Does anybody know of any available …
-
Align Multikb Contigs Of A Mammalian Genome Against List Of Mammalian Genome Assemblies
written by Ahdf-Lell-Kocks 163<p>I would like to be able to align multi-Kb contigs of a non-assembled mammalian genome against the list of available mammalian genomic assemblies. I would …
-
Samtools: How To Find Tandem Hits Of Same Query Sequence In An Indexed Bam/Sam File?
written by Ahdf-Lell-Kocks 163<p>I would like to know how can I find tandem hits of the same query sequence in an indexed bam/sam file? </p> <p>By this I …
-
Novel Sequence Insertions 1000 Genomes Project
written by Ahdf-Lell-Kocks 163<p>I am looking for novel sequence insertions identified in the 1000 genomes project, and I found 3 files in this directory:</p> <pre><code>ftp://ftp.ebi.ac.uk/pub/databases/dgva/estd59_Durbin_et_al_2010/gvf/estd59_Durbin_2010_highquality_novel_sequence_insertion_pilot2.gvf ftp://ftp.ebi.ac.uk/pub/databases/dgva/estd59_Durbin_et_al_2010/gvf/estd59_Durbin_2010_highquality_mobile_element_insertion_pilot1.gvf ftp://ftp.ebi.ac.uk/pub/databases/dgva/estd59_Durbin_et_al_2010/gvf/estd59_Durbin_2010_highquality_mobile_element_insertion_pilot2.gvf </code></pre> …
@unknown, please reply and/or accept answers to your previous posts before asking related questions.
@Casey Bergman: in this question I am asking for any resource that compiles these sequences, not only 1000G-related. I thought this being a different question, I should post it as a new one.