Similarity matrix calculation of a manual sequence alignment
I want to calculate a pairwise similarity score matrix based on a manually aligned protein sequence base on a substitution matrix.
All resources that I found on internet, they do a prealignment step but I want to obtain the pairwise score without any previous multialignment process.
• 3,524 views
•
link
updated
by
Ram
•
written
by
sriosazu •
•
written
by
sriosazu •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Adding a new protein to similarity matrix based on sequence alignment
written by 27b99607 •
-
python calculation of protein multiple sequence alignment
written by ttubiana
-
Calculate the score of sequence from Position-specific scoring matrix (PSSM)
written by howenwy2 •
-
Is there a tool to calculate sequence similarity of sequences in a MSA?
written by DNAngel
-
Formal definition of protein sequence similarity
written by backpropaganda •
-
Using BLAST to calculate all-pair sequence similarity score
written by convalescence21 •
-
Basic question about protein distance with multiple sequence alignment
written by bds1217 •
-
How to implement blosum62 substitution score in a program?
written by Neha shri •
-
Things to do with the clustered groups of proteins from orthoMCL tool???
written by JstRoRR
-
Similarity Score Of Multiple Sequence Alignment
written by Ananth •
