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Extended Haplotype Homozygosity Calculation

Respected Members,

I am new to Population genetics world and I am stuck while calculating extended Haplotype Homozygosity. Please help

  1. Can I use output file of PHASE program as input file for Calculating EHH in rehh package of r
  2. How to interpret this image of EHH obtained from rehh package in r

Rplot image

Thanks in advance

ehh selection genetics population positive

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