how to align a sequence with a pair of sequence DNA?
how to align a short reads (paired-end) over a sequence. while the short reads file is in two files ie two sequences which represent the short reads?
example:
sequence: AGTGGTAGCTGCCTG
short read: GGTAGCT
|||| | |
CCATCGA
in Computer science how alignment?
was a string (sequence) with two chianes of chars (short reads)
thank you
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