Tools to "bin" DNA methylation reads into different areas of gene structure

Hi, any idea on how to plot such a graph of DNA methylation profiles over a gene structure? Any software?
From what I have learnt, it should be binning these reads on 1 out of 10 for every features and then plot them over.
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Hi,
You can look at https://github.com/shenlab-sinai/ngsplot
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