Bedtools To Compare A Vcf File From Samtools Mpileup With Dbsnp?
Hello,
I have one big vcf file which is genereated by samtools mpileup by comparing 6 cell lines to see whether there are SNP differences between them.
I would like to use bedtools for intersecting. How can I do it? do you have some scripts for that.
Thanks
• 3,462 views
•
link
1 answer
What's wrong with BEDTools intersectBed? It takes vcf's as inputs.
• 0 views
•
link
Log in to answer this question.