This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Lositan freezes when preparing selection table

As with others, I find that LOSITAN freezes after running a simulation when it is generating a selection table. It says Done (preparing selection table, please wait...)

I've posted the error from the Java console.

Thank you

Error script

Missing Permissions manifest attribute in main jar: http://popgen.net/soft/lositan/code2/lib/selwb.jar
Mac OS X /Users/benachlab /
8189
0.045532 44
8189
0.020308 53
Unhandled exception in thread started by <bound method SplitFDist.monitor of <Bio.PopGen.FDist.Async.SplitFDist object at 0x33>>
Traceback (most recent call last):
  File "/Users/benachlab/.lositan/Bio/PopGen/FDist/Async.py", line 128, in monitor
    self.report_fun(fst)
  File "/Users/benachlab/.lositan/Main.py", line 626, in report
    selLoci = getSelLoci(pv)
  File "/Users/benachlab/.lositan/Main.py", line 418, in getSelLoci
    p = getP(pv[currPos])
IndexError: index out of range: 0
lositan next-gen snp

0 answers

No answers yet.

Log in to answer this question.