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assembly of large Genome(tool)

hello,
I wanted to know what is the most appropriate tool assembler for data from a large "large genome" as the plant genome? according to your experiences.
thank you

assembly large génome ngs
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updated by Ram Ram • written by midox midox

What kind of library do you have? Do you have PacBio reads or not? Based on what you have there will be different stratify

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updated by Ram Ram • written by Medhat Medhat

yes I have PacBio Reads .
and I want to find an assembler which is adaptable to wide assembled Genome

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written by midox midox

you have PacBio with illumina to correct or only PacBio

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written by Medhat Medhat

yes, i have PACBIO with Illumina.

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written by midox midox

1 answer

The best assembler I've been exposed to is the the one developed by NRGene on maize. They specialize in the complex plant genomes while most other assemblers were developed to be used on human or animal systems. Here's one of the press releases on their work in maize:

http://www.bigdatanews.com/group/bdn-daily-press-releases/forum/topics/big-data-genomic-analysis-delivers-complete-corn-genome-in-34-hou

Good luck to you!

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written by Moss • Moss

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