Tool to classify RNA types from your RNA-seq experiment

Hi all, I'm looking for a tool I can use to categorize the RNA's from my seq experiment similarly to what is shown below. I saw somewhere that Picard tools may do the trick, but I couldn't find this functionality after a quick look.

Any suggestion would be greatly appreaciated :)

rna-seq rna

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updated 3.6 years ago by Ram

• written 11.2 years ago by rna-seq_researcher •

1 answer

The GTF file for your given annotation may have this information. You could also use biomaRt to take the gene (or transcript) IDs and find their biotype, then it's a simple case of counting numbers for each category.

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updated 3.6 years ago by Ram

• written 11.2 years ago by andrew.j.skelton73