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Why some genomes are not available in genbank ftp?
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12 months ago
fhsantanna • 440
Brazil

I have tried to download some genomes using the genbank ftp (ftp://ftp.ncbi.nih.gov/genomes/). However I have noticed that some are available in NCBI portal but not in ftp. Example: Paenibacillus borealis

Why there is this difference between these locations?

genbank ftp • 855 views
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13 months ago
h.mon 25k
Brazil

It is available probably under the "all" subfolder, e.g. Paenibacillus borealis is here:

ftp://ftp.ncbi.nih.gov/genomes/all/GCF_000758665.1_ASM75866v1
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Is there a particular reason why this genome is not included in "BACTERIA" or "BACTERIA_DRAFT" subfolder?

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I really do not know, did not find anything about it here.

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