This is a test version of Biostars. For the public version, visit https://www.biostars.org.
conversion of protein identifiers

After performing psi-blast of query sequence (Uniprot accession), I got some hits as follows:

gi|148833513|ref|NP_001092104.1|
gi|219521533|gb|AAI43943.1|
gi|160017954|sp|Q5R5P4.2|RBM47_PONAB

How to convert all these different identifiers uniformly as Uniprot accession.

I tried Retrieve/Id Mapping tool from uniprot but no results found!

Thanks in advance

sequence
• 2,009 views • link
updated by Ram Ram • written by RT!37 • RT!37

1 answer

  1. Perform string splitting using your language of choice to extract the ID you want.
  2. Use BioMart.
• 0 views • link
updated by Ram Ram • written by Brice Sarver Brice Sarver

But if I am using gi identifier in Biomart, which Input external references (dropdown menu in convert section) should be used?

• 0 views • link
updated by Ram Ram • written by RT!37 • RT!37

Log in to answer this question.

More posts like this