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microT-CDS: ENSEMBL build for miRNA target coodinates

Does anyone know what build of ENSEMBL the results of microT-CDS target positions are currently based on? The 'Help' page indicates v69, but that is not the case. I have tried with he current ENSEMBL (v80) and this is not the case either. Any help would be appreciated.

An example of the current output exists below. The regions on chr 9 indicated don't correspond to those in ENSEMBL v69.

Transcript Id     Gene Id(name)              Mirna Name        miTG score
ENST00000361264   ENSG00000198876 (DCAF12)   hsa-miR-146a-5p   1
UTR3              9:34086853-34086881        0.003033854        
UTR3              9:34086698-34086726        0.00646972         
UTR3              9:34086570-34086598        0.131451917
microt-cds diana

Have you asked the authors? On the other hand, this is the kind of information any serious database should mention on their web page.

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