Dear all,

I am using Olego for mapping and Quantas for quantification of alternative splicing. But I am not able to understand the output of countit (summarize_splicing_wrapper.pl). Following is the output of the perl script for cassete exons. In this output file, I am not able to understand name, isoform1Tags, isoform2Tags, exonTags, inclusionJunction1Tags, inclusionJunction2Tags and skipping junctionTags.

#chrom   chromStart   chromEnd   name                                  score   strand   type   isoformIDs   isoform1Tags   isoform2Tags   exonTags       inclusionJunction1Tags   inclusionJunction2Tags   skippingJunctionTags
chr19    58862756     58863920   CA-1-4217-4315-4402-4812[INC][1/20]   0       -        cass   INC/SKIP     9.3075437747   1.6924562253   9.3075437747   0.3075437747             0.3075437747             1.6924562253