I downloaded rna-seq counts using the cgdsr package and also directly from the tcga's data portal. The raw counts do not agree. Any explanations appreciated.
Hi, I have downloaded open-access TCGA FPKM-samples for expression analysis with all the relevant manifest and metadata files form **TCGA cart**. It was required to …
Hi all, I want to analysis Htseq Counts data to find differantial expression genes. I have installed TCGAbiolinks package and created query but its not …
Hi I have RNA-Seq data from patients and downloaded online RNA-Seq control datasets. What do you recommend me to correct batch effects. What quality controls …
Hello all, I am interested in examing precursor miRNA data from TCGA ([GDC Data Portal][1]). Although I do not have access to controled raw sequences …