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Problem of plink

Error:

Options in effect:
                   --file SNUIM_org 
                   --chr 20
298930 (of 298930) markers to be included from [ SNUIM_org.map ]
Scan region on chromosome 20 from [ rs6139074 ] to [ variant.69320 ]
ERROR:
A problem with line 404 in [ SNUIM_org.ped ]
Expecting 6 + 2 * 298930 = 597866 columns, but found 596703

I run plink 1.07 for split my data by chromosomes.

but occur that problem.

Why that say wrong columns in my data? What should I do in this case?

plink snp
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updated by Ram Ram • written by science0530 • science0530

Check if line 404 of the ped file contains some weird character.

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written by Giovanni M Dall'Olio Giovanni M Dall'Olio

I have the same problem, but on line 1: 

ERROR: 
Problem with line 1 in [ output_in_plink.ped ]
Expecting 5 + 2 * 840907 = 1681819 columns, but found more

I can't find any weird character.

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written by beausoleilmo beausoleilmo

Please don't post unrelated answers/comments in pre-existing threads.

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written by GenoMax GenoMax

1 answer

how can I find genomic data?

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written by alipanah.masoud • alipanah.masoud

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