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Calculate pair-wise dissimilarity of DNA sequences in Python
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3.2 years ago
songzewei • 0
United States

Is there any available package in Python that can calculate dissimilarity between two DNA sequences using any alignment algorithm?

Thanks!

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23 days ago
RamRS 21k
Houston, TX

Maybe find the similarity and use the complement?

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yes, but I would like to know if there is any library or script available out there.

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I guess you could use EMBOSS needle or water wrapped in BioPython: http://biopython.org/DIST/docs/_api_159/Bio.Emboss.Applications-module.html

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