how to calculate the accuracy of imputation?

I run bingle 4.0 to imputate some chip snps to GWAS. After that, I would like to check the accuracy (quality) of my imputation. I would like to include two parameters: match ratio and correlation. Of course, I could write some script by my self and I am wondering is there a tool could to do that?

Thank and with best regards,

Xinhui

snp

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written 11.3 years ago by xinhui.wang

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