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How To Read Bam.Ebd, Bam.Ebi Format Dataset

I have the sequencing data divided into bam.ebd and bam.ebi format for each individual like:

HG00096.mapped.ILLUMINA.bwa.GBR.low_coverage.20101123.bam.ebd  
HG00096.mapped.ILLUMINA.bwa.GBR.low_coverage.20101123.bam.ebi
HG00102.mapped.SOLID.bfast.GBR.low_coverage.20101123.bam.ebd      
HG00102.mapped.SOLID.bfast.GBR.low_coverage.20101123.bam.ebi

Anyone know how to read and use these data for analysis?

Thanks,

sequence format
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updated by umer.zeeshan.ijaz umer.zeeshan.ijaz • written by Lerong • Lerong

seems like an output of a third party tool that processed those files

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written by Istvan Albert Istvan Albert

1 answer

I believe (I might be wrong) but these files were produced from pileup in SNPTools and EBD are "Effective Base Depth" files. Kindly check the manual and Best Practises with SNPtools entry.

Best Wishes, Umer

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written by umer.zeeshan.ijaz umer.zeeshan.ijaz

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