RPS Blast, COG and KOG analysis
Hello,
Is there a tutorial somewhere in setting up your own RPS BLAST database and finding KOG and COGs in a given proteome?
The only way I know how to do it is through http://weizhong-lab.ucsd.edu/metagenomic-analysis/server/kog/ an online server with a 2011 rpsblast database. Is RPS BLAST obsolete now? Is there something that replaced this sort of analysis?
Thanks,
Adrian
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Adrian Pelin
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Adrian Pelin
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Hi Adrian:
"Found COG and KOG databases here: ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/little_endian/"
Are these the updated KOGs. I didnt find any updates for the KOGs in the COG db ftp site
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Found COG and KOG databases here: ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/little_endian/
According to this: ftp://ftp.ncbi.nih.gov/pub/COG/COG2014/data/Readme.201502.txt there was a recent COG database release in December 2014.
Hello I had a similar question concerning the KOG database. Did you ever figure out your answer? I want to search for genes in KOG database but can't convert gene IDs to match the ones in the KOG database and the Weizhong lab website is no longer accessible.