How to run Mugsy software on Linux Ubuntu 11.04?
I can't run it as written in instructions How to set up .sh file with installation path correctly? Here is my effort to set it up:
#!/bin/sh
export MUGSY_INSTALL=./mugsy_x86-64-v1r2.1
export PATH=$PATH:$MUGSY_INSTALL:$MUGSY_INSTALL/mapping
export PERL5LIB=$MUGSY_INSTALL/perllibs
export MUGSY_INSTALL=/media/44D2-B182/Mugsy_BOOKS_Are_Here_July_25/mugsy.
#For testing TBA
#export PATH=$PATH:$MUGSY_INSTALL/../../multiz-tba/trunk/
#export PATH=$PATH:$MUGSY_INSTALL/home/samsung/saitdlyafirmi/mugsy/
#export MUGSY_INSTALL=/home/samsung/saitdlyafirmi/mugsy/
Then I run source mugsyenv.sh in terminal in the appropriate directory and nothing happens
Thank you, Folks
•
written
by
fashiondesignrussian •
Nothing will happen when you source the file. When you source the file, all it does is setup the environment variables for mugsy. Running mugsy is a different step (which you haven't shown that you have tried). When posting code or scripts, please attempt to format your question appropriately, it's almost unreadable as you posted it.
I expected to see something like: 'Now you can run Mugsy, put your .fasta files". Thank you. So can I run it with two or three .gb and .fasta files?
•
written
by
fashiondesignrussian •
The instructions are quite clear on what to do next if you read them:
mugsy --directory /data/output --prefix mygenomes genome1.fasta genome2.fasta genome3.fastaThank you, I'll try, I seldom use Linux today
•
written
by
fashiondesignrussian •
Log in to answer this question.
