r3Cseq rat genome

Hi I want to analyse 4C-seq data on rat genome. r3Cseq does not support the rat genome.

Any ideas on how to modify it, or alternative packages?

rat-genome r3cseq 4c-seq

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updated 4.2 years ago by Ram

• written 11.4 years ago by izhak.kehat •

1 answer

Try to use Basic4Cseq package.

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updated 4.2 years ago by Ram

• written 11.4 years ago by Evgeniia Golovina

There are also

4Cseqpipe
FourCSeq R package

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updated 4.2 years ago by Ram

• written 11.4 years ago by Evgeniia Golovina

Hi, Perhaps you know if I can use the FourCSeq R package if I don't have biological replicates? Thanks

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written 10.2 years ago by tlgolan •

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