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Het/Mixed Indel identification tools

I have sanger data (.ab1 files) that I want to call het/mixed indels on, I was wondering what are some of the tools you all use for such analysis. So far, I see Mutation Surveyor and Polyscan - I want to know what is a tool of choice? Also, what would you expect to see when comparing mixed indels between somatic and germline data?

Thanks in advance

snp sanger indel
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updated by trausch trausch • written by sangerdude • sangerdude

1 answer

We designed tracy to decompose het. mutations in Sanger chromatogram trace files (*.ab1). There is also a web frontend available for tracy, called indigo: https://www.gear-genomics.com/indigo/

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written by trausch trausch

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