I have a file like this:

Index    Name                  Chromosome    Position    GenTrain Score    SNP      ILMN Strand    Customer Strand    NormID
1        ARS-BFGL-BAC-10172    14            6371334     0.9014            [A/G]    TOP            TOP                2
2        ARS-BFGL-BAC-1020     14            7928189     0.9260            [T/C]    BOT            TOP                1
5        ARS-BFGL-BAC-10365    14            27005721    0.9176            [A/C]    TOP            BOT                2
7        ARS-BFGL-BAC-10793    14            29259114    0.9233            [C/G]    TOP            BOT                101
8        ARS-BFGL-BAC-10867    14            34639444    0.9293            [G/C]    BOT            BOT                102

The "TOP/BOT strand" file shows that if I have A/C or A/G (like index 1 and 5) is TOP, so the Allele A is A and the allele B is G or C. So, what is the strand that I should use? ILMN strand?

The file shows that if I have C/T or G/T is BOT, so the Allele A is T and Allele B is C or G. But in my file (index 2), the SNP is T/C BOT. what is the Allele A and B?

And index 7 and 8, what is the allele A and B?

Thank you!!