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proteome download if not included in the reference set provided by uniprot

I am looking for proteomes that are not included in the reference set provided by uniprot (they don't pop up on the uniprot/proteome search and are also not available from ENSEMBLE). However, it seems still to be possible to blastp against proteomes in which I am interested in ( e.g. tarsius syrichta, alligator mississippiensis ...). Is it somehow possible to download these proteomes from uniprot or somehwere else?

genome blast assembly
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updated by lisa.johnson.cohen • lisa.johnson.cohen • written by alexshauser • alexshauser

1 answer

You can download a fasta of all protein sequence records from a species of interest in the UNIPROT database by searching the taxonomy section, like this: http://www.uniprot.org/taxonomy/?query=tarsius+syrichta&sort=score
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written by lisa.johnson.cohen • lisa.johnson.cohen

But what I actually want is the whole predicted proteome not the few annotated proteins!

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written by alexshauser • alexshauser

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