Hi,

I've been using RPMM (version 1.20) in R (3.1.2 GUI 1.65 Snow Leopard build (6833)) to analyse IlluminaMethylation27K arrays.

I used blcTree function on my top 10% most variable probes and it is working nicely. I've got distinguishable clusters and as expected normals are closer to each other than to disease samples.

However, how can I extract which probes the model is using to distinguish the clusters from each other?

Any suggestions appreciated.

Olivia