Trasncriptional active genes
Hello to all
I'm interested in the percentage of transcriptionally active genes in a cell (in average or if possible in different cell types). Moreover the distribution of high, medium and low expressed genes (yes I know I'm asking too much...). Does anyone have a good reference on this issue?
Thanks in advance
Miq
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to identify temporal differential gene expression patterns among cell types in scRNA-seq
written by Chilly •
-
Deep Sequencing vs Shallow Sequencing but repeated several times
written by andrebolerbarros •
-
Neuronal markers are expressed in all cell types in 10X single-cell RNASeq
written by viktorfeketa •
-
What are some references of works that use a TPM expression threshold for filtering samples/genes?
written by n,n
-
TPM on SingleCell RNASeq
written by difraiadomenico •
-
When exactly is a gene "expressed"?
written by exin
-
Comparing RNAseq expressions in cancer cell lines to patient population in order to pick cell lines…
written by shaban.hiba8 •
-
Mitochondrial Gene percentage threshold in single cell RNA-Seq
written by hkarakurt
-
Too many differentially expressed genes in RNA-seq?
written by virginia.s.markham •
-
How to choose a FPKM cut-off
written by hana
Do you just want methods to define what genes are expressed (presumably then using quantiles to define high/medium/low) or do you want a database of some sort with defined expression degrees (if so, for which organism)?
Hi Devon,
I'm looking for percentages in average, I mean x% of genes in a cell are transcriptionally active and of these the x% have high levels x% medium etc. The exact definition of what are high or low is not really important, it is a qualitative issue.
Thanks