Hi everyone,

I am new in the field of structural bioinformatics. I generated model for a enzyme using Modeller software and after validating it I transferred a ~12 res. peptide from another Enzyme-peptide complex into the active site of my model. I then validated it using MolProbity which showed presence of Clashes, bad bond lengths and bad angles (outliers: 17/271). I used Chiron to remove bad clashes but am unable to find a tool/strategy to remove bad bond lengths and bad angles. Is there any way I can fix this problem? I appreciate your help on this.