This is a test version of Biostars. For the public version, visit https://www.biostars.org.
downloading cds from ensembl biomart

I want to download a cds sequence database from ensembl from biomart, but every time I encounter a time out

Can anyone tell me how to achieve this. The specs are

database: ensembl gene 78

dataset : mus musculus genes

attributes: sequenes > coding sequence

header: Ensembl Gene ID, Ensembl Transcript ID, coding sequence

ensembl biomart cds

1 answer

You don't need to use BioMart for this, the data is on the FTP site.

Log in to answer this question.