How to convert WHEAT gene IDs from a gtf file to GO
Hi,
I just finished analyzing RNA-seq data from wheat and would like to find the matching GO terms.
Anyone know how could I convert the gtf ID to a GO term?
I looked at ensembl and could find GOs by manual search but this is a long list and I could not find the full gtf ID -> GO conversion.
TNX!
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1 answer
You need to either use packages or write your own codes. I use goseq for GO enrichment analysis http://bioconductor.org/packages/release/bioc/html/goseq.html. In that case you have to provide some inputs like gene-length and so on to package for analysis. Note: goseq runs in R.
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