similarety search for homologous alignment
By using blastp, and the E < 10‐50 as threshold for homology, how many homologs do you find in Swissprot? From which species are the five closest homologs? (If there are less than five, then state species names for all. If there are none, try selecting a different sequence) How do the results change if you search in the non‐redundant protein database instead of in Swissprot, and why? My sequence is
>sp|Q42525|HXK1_ARATH Hexokinase-1 OS=Arabidopsis thaliana GN=HXK1 PE=1 SV=2
MGKVAVGATVVCTAAVCAVAVLVVRRRMQSSGKWGRVLAILKAFEEDCATPISKLRQVAD
AMTVEMHAGLASDGGSKLKMLISYVDNLPSGDEKGLFYALDLGGTNFRVMRVLLGGKQER
VVKQEFEEVSIPPHLMTGGSDELFNFIAEALAKFVATECEDFHLPEGRQRELGFTFSFPV
KQTSLSSGSLIKWTKGFSIEEAVGQDVVGALNKALERVGLDMRIAALVNDTVGTLAGGRY
YNPDVVAAVILGTGTNAAYVERATAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEFDH
TLDFESLNPGEQILEKIISGMYLGEILRRVLLKMAEDAAFFGDTVPSKLRIPFIIRTPHM
SAMHNDTSPDLKIVGSKIKDILEVPTTSLKMRKVVISLCNIIATRGARLSAAGIYGILKK
LGRDTTKDEEVQKSVIAMDGGLFEHYTQFSECMESSLKELLGDEASGSVEVTHSNDGSGI
GAALLAASHSLYLEDS
• 1,543 views
•
link
updated
by
Ram
•
written
by
shoxan-rahman •
•
written
by
shoxan-rahman •
0 answers
No answers yet.
Log in to answer this question.
Hello shoxan-rahman!
We believe that this post does not fit the main topic of this site.
We will not do your assignment for you.
For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.Cheers!