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cluster comparison-gene diagrams

Hello,

i have been trying to map and compare gene clusters like this .http://openi.nlm.nih.gov/imgs/512/194/2686493/2686493_gkn751f6.png i have tried using clc work bench, snap gene, fancy gene but non comes close to that diagram in the link. so i have three newly sequenced strains and i want to compare one cluster against P.sp. f113. any ideas on how to go about this problem or even softwares. By the way, my scripting is still novice.

alignment sequence gene
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updated by dago dago • written by samuelksm • samuelksm

1 answer

Not exactly like in the link but these software could help you:

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updated by Ram Ram • written by dago dago

Dago thank you for your reply, i have tried using the easyfig but i cannot get the diagram i want, i only get a black line, i figured it could be the input gbk file, i have fasta files and i have tried to convert them to gbk format but they wont generate a proper diagram using easyfig. i converted the fasta files to gbk using emboss tools.so how can i generate a proper genebank file?

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written by samuelksm • samuelksm

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