Hi,
I have been using the below cuffdiff code to compare my samples and find DEG's, I dont know why cuffdiff is not taking labelling part
cuffdiff -p 5 -o Diff -L WT,KO merged_asm/merged.gtf WT1/WT1_accepted_hits.bam WT2/WT2_accepted_hits.bam,KO1/KO1_accepted_hits.bam KO2/KO2_accepted_hits.bam
It returns with the error
Error: number of labels must match number of conditions
Can anyone help me on this error please, Thanks in advance.
•
written
by
hothriananya
The error is saying exactly what the problem is. It's likely that you meant to use this:
cuffdiff -p 5 -o Diff -L WT,KO merged_asm/merged.gtf WT1/WT1_accepted_hits.bam,WT2/WT2_accepted_hits.bam KO1/KO1_accepted_hits.bam,KO2/KO2_accepted_hits.bam
Thanks it is working now.
•
written
by
hothriananya
Log in to answer this question.
