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Protein-Domain Database.

I'm looking for a huge input set for my algorithm, that contains info about proteins and corresponded domains (something like Pfam but bigger). If you aware of such a database, please drop me a line.

protein
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updated by Chris • Chris • written by Ivr • Ivr

2 answers

Have you tried InterPro or NCBI-CDD ?

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written by Khader Shameer Khader Shameer

SCOP? CATH?

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written by Chris • Chris

AFAIK, protein domains in structural domain databases (SCOP or CATH) have less coverage than sequence domain database (Pfam).

• 0 views • link
written by Khader Shameer Khader Shameer

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