Question

Illumina 450K array manifest for hg38?

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9.2 years ago

rmccloskey ▴ 240

I'm looking to map the results of some methylation experiments, performed with the Illumina 450K array, to hg38. I know there is a manifest on Illumina's website as well as in UCSC, but those are for hg19. Is there a source for the locations of the CpG probes on hg19, or should I just liftOver from the hg38 versions?

hg38 illumina 450k methylation • 7.2k views

ADD COMMENT • link updated 2.0 years ago by Ram 43k • written 9.2 years ago by rmccloskey ▴ 240

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I wanderer if you have any success with your question ??

ADD REPLY • link 7.9 years ago by Tanvir Ahamed ▴ 350

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So did you get any success. Even today I am struggling to find hg38 CpG probes.

ADD REPLY • link 6.2 years ago by noorpratap.singh ▴ 330

score 2 · Answer 1 · 2020-08-22

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3.7 years ago

Kevin Blighe 87k

Not checked but a 'lifted over' version seems to be available here: https://zwdzwd.github.io/InfiniumAnnotation

Kevin

ADD COMMENT • link 3.7 years ago by Kevin Blighe 87k