TFBS in overlapping upstream regions in Bacteria
Dear community,
In order to find novel TFBS I am searching for some motifs in upstream regions.
Some upstream sequences in the forward strand overlap with coding sequences in the reverse strand. Should I also consider such sequences? Would you expect differences in GC% in overlapping from non-overlapping TFBS?
Thanks
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Ram
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Juan Cordero
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written
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Juan Cordero
1 answer
I found the following paper really interesting in this regards.
http://www.sciencedirect.com/science/article/pii/S0378111912003770#
Maybe it helps you.
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