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aracne in R using minet package

I am trying to learn ARACNE for the first time but I am unable to start anything since I don't have the input dataset file. Below is what mentioned according to minet manual

build.mim(dataset, estimator = "spearman", disc = "none", nbins = sqrt(NROW(dataset)))

The argument dataset data.frame containing gene expression data or any dataset where columns contain variables/features and rows contain outcomes/samples.

Can anyone of you please tell where can I get this sample input dataset file? and how to start executing the program step by step starting from the scratch. Is there any video tutorials available to learn for a first timer like me.

r
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updated by Ram Ram • written by stroman05 • stroman05

Sorry, see answer

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updated by Ram Ram • written by catster • catster

1 answer

You can load the provided dataset using data(syn.data) and the infer a network using ARACNE with minet(syn.data,method="aracne").

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updated by Ram Ram • written by catster • catster

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